C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lymphocyte specific 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140626 Lsp1-008 ENSMUSG00000018819 10090 + 7:142483259-142489983 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENSMUST00000140626
Transcript ID Brain Liver Ovary Placenta Testis
ENSMUST00000140626 1.777±0.00 0.530±0.00 34.606±0.00 9.162±0.00 1.211±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912
CIL_0005ML CIL_0005ML_0003 CGP 7:142441808-142494867
CIL_0005NK CIL_0005NK_0003 CGP 7:142460809-142506771

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000449530 LSP1P3-001 processed_pseudogene Homo_sapiens 9e-17 90
ENST00000599825 RP11-458I4.1-001 processed_pseudogene Homo_sapiens 1e-18 95

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