C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hnRNP-associated with lethal yellow
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140713 Raly-004 ENSMUSG00000027593 10090 + 2:154791352-154864049 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000140713
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000140713 65.939±6.59 83.543±14.64 17.719±4.19 20.416±0.00 44.960±16.81 47.528±5.10 8.976±1.24 20.643±5.22 20.798±16.65 45.752±14.44 5.743±0.06 69.007±16.80 23.621±6.01 11.565±1.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0002 VISTA 2:154750090-155352094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246194 RALY-002 protein_coding Homo_sapiens 0 894
ENST00000333552 RALY-005 protein_coding Homo_sapiens 0 399
ENST00000375114 RALY-001 protein_coding Homo_sapiens 0 455
ENST00000413297 RALY-003 protein_coding Homo_sapiens 0 370
ENST00000442805 RALY-007 protein_coding Homo_sapiens 0 455
ENST00000448364 RALY-004 protein_coding Homo_sapiens 0 684
ENST00000488227 RALY-009 processed_transcript Homo_sapiens 0 268
ENST00000493399 RALY-006 processed_transcript Homo_sapiens 0 355

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