C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140806 Prpf40b-013 ENSMUSG00000023007 10090 + 15:99295244-99307077 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverOvaryENSMUST00000140806
Transcript ID Liver Ovary
ENSMUST00000140806 1.618±0.00 10.246±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261897 PRPF40B-002 protein_coding Homo_sapiens 0 937
ENST00000380281 PRPF40B-001 protein_coding Homo_sapiens 0 1088
ENST00000548436 PRPF40B-009 retained_intron Homo_sapiens 0 791
ENST00000548825 PRPF40B-019 protein_coding Homo_sapiens 0 1136
ENST00000551111 PRPF40B-011 retained_intron Homo_sapiens 0 446
ENST00000551418 PRPF40B-010 retained_intron Homo_sapiens 0 494

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