C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369872 SYPL2-001 ENSG00000143028 9606 + 1:109466628-109482137 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369872
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369872 0.869±0.00 0.548±0.00 0.183±0.07 1.001±0.76 1.060±0.00 2.767±2.44 2.427±2.24 1.251±1.14 0.351±0.00 21.140±13.70 1.506±1.14 1.207±0.86 3.328±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283
CIL_000735 CIL_000735_0002 CGP 1:109399031-109482137
CIL_000736 CIL_000736_0003 CGP 1:109466628-109492804

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0016020 IEA membrane
GO:0021762 IEP substantia nigra development
GO:0030285 IBA integral component of synaptic vesicle membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029486 Sypl2-201 protein_coding Mus_musculus 0 1092
ENSMUST00000141387 Sypl2-001 protein_coding Mus_musculus 0 1092
ENSMUST00000156371 Sypl2-002 protein_coding Mus_musculus 0 634
ENSMUST00000161113 Stag3-002 retained_intron Mus_musculus 0.0003 53
ENSMUST00000159483 Stag3-003 retained_intron Mus_musculus 0.0003 53
ENSMUST00000048028 Stag3-001 protein_coding Mus_musculus 0.0003 53
ENSMUST00000162245 Stag3-004 protein_coding Mus_musculus 0.0003 53
ENSMUST00000160849 Stag3-008 protein_coding Mus_musculus 0.00003 53

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