C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family B (MDR/TAP), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141510 Abcb9-003 ENSMUSG00000029408 10090 - 5:124071711-124090262 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastMusclePlacentaTestisENSMUST00000141510
Transcript ID Brain Breast Muscle Placenta Testis
ENSMUST00000141510 3.711±0.00 0.530±0.00 0.600±0.00 0.339±0.00 1.990±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_00006P CIL_00006P_0003 CGP 5:124004641-124095798
CIL_0002PC CIL_0002PC_0002 CGP 5:124061530-124115483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005764 ISO lysosome
GO:0005789 ISA endoplasmic reticulum membrane
GO:0016021 IBA integral component of membrane
GO:0042626 IBA ATPase activity, coupled to transmembrane movement of substances
GO:0055085 IBA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280560 ABCB9-004 protein_coding Homo_sapiens 0 1633
ENST00000344275 ABCB9-006 protein_coding Homo_sapiens 0 1633
ENST00000346530 ABCB9-201 protein_coding Homo_sapiens 0 1450
ENST00000392439 ABCB9-002 protein_coding Homo_sapiens 0 1633
ENST00000426173 ABCB9-010 nonsense_mediated_decay Homo_sapiens 0 1188
ENST00000442028 ABCB9-202 protein_coding Homo_sapiens 0 1633
ENST00000442833 ABCB9-005 protein_coding Homo_sapiens 0 1633
ENST00000536976 ABCB9-014 protein_coding Homo_sapiens 0 880
ENST00000537276 ABCB9-008 nonsense_mediated_decay Homo_sapiens 0 2313
ENST00000538895 ABCB9-009 retained_intron Homo_sapiens 0 1607
ENST00000540285 ABCB9-003 protein_coding Homo_sapiens 0 2254
ENST00000540971 ABCB9-012 protein_coding Homo_sapiens 0 747
ENST00000541424 ABCB9-013 protein_coding Homo_sapiens 0 634
ENST00000541983 ABCB9-017 processed_transcript Homo_sapiens 0 204
ENST00000542448 ABCB9-016 protein_coding Homo_sapiens 0 459
ENST00000542678 ABCB9-001 protein_coding Homo_sapiens 0 1633
ENST00000543935 ABCB9-011 protein_coding Homo_sapiens 0 287
ENST00000545373 ABCB9-019 protein_coding Homo_sapiens 2.8026e-45 185
ENST00000546077 ABCB9-015 protein_coding Homo_sapiens 0 422
ENST00000546289 ABCB9-018 protein_coding Homo_sapiens 0 806

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