C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family B (MDR/TAP), member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029408 Abcb9 10090 - 5:124061530-124095798 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031354 Abcb9-001 124061530-124095798 protein_coding
  ENSMUST00000126856 Abcb9-004 124071711-124090262 nonsense_mediated_decay
  ENSMUST00000126970 Abcb9-002 124087943-124095786 retained_intron
  ENSMUST00000141510 Abcb9-003 124071711-124090262 nonsense_mediated_decay
  ENSMUST00000148392 Abcb9-006 124076119-124079820 processed_transcript
  ENSMUST00000153433 Abcb9-005 124073325-124079090 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031354ENSMUST00000126970ENSMUST00000141510
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031354 2.339±0.62 4.209±1.06 0.513±0.05 3.380±2.34 2.918±1.15 1.902±0.28 1.426±0.41 1.568±0.19 0.509±0.16 1.605±0.23 1.875±0.58 0.852±0.46 1.935±2.00 4.337±2.61
ENSMUST00000126970 1.408±0.62 N/A 0.306±0.04 N/A 1.723±0.49 N/A N/A 0.750±0.15 1.023±0.64 0.653±0.00 N/A 0.287±0.19 0.331±0.07 N/A
ENSMUST00000141510 N/A N/A N/A 3.711±0.00 0.530±0.00 N/A N/A N/A N/A N/A 0.600±0.00 N/A 0.339±0.00 1.990±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_00006P CIL_00006P_0003 CGP 5:124004641-124095798
CIL_0002PC CIL_0002PC_0002 CGP 5:124061530-124115483

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005764 ISO lysosome
GO:0005765 IEA lysosomal membrane
GO:0005789 ISA endoplasmic reticulum membrane
GO:0006200 IEA ATP catabolic process
GO:0015031 IEA protein transport
GO:0015440 IEA peptide-transporting ATPase activity
GO:0015833 IEA peptide transport
GO:0016021 IBA integral component of membrane
GO:0022891 IEA substrate-specific transmembrane transporter activity
GO:0030176 IEA integral component of endoplasmic reticulum membrane
GO:0042626 IBA ATPase activity, coupled to transmembrane movement of substances
GO:0042803 IEA protein homodimerization activity
GO:0055085 IBA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056200 abcb9 ATP-binding cassette, sub-family B (MDR/TAP), member 9 protein_coding Danio_rerio
ENSG00000150967 ABCB9 ATP-binding cassette, sub-family B (MDR/TAP), member 9 protein_coding Homo_sapiens

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