C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA splicing endonuclease 54 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141748 Tsen54-003 ENSMUSG00000020781 10090 + 11:115814771-115820528 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryPlacentaTestisENSMUST00000141748
Transcript ID Adrenal Breast Colon Lung Ovary Placenta Testis
ENSMUST00000141748 5.198±0.96 3.522±0.00 4.484±0.35 3.338±0.00 6.203±1.03 6.153±0.25 1.795±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IY CIL_0007IY_0002 CGP 11:115799183-115823094
CIL_0007IP CIL_0007IP_0002 CGP 11:115814724-115855780

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333213 TSEN54-001 protein_coding Homo_sapiens 0 662
ENST00000434205 TSEN54-005 protein_coding Homo_sapiens 0 339
ENST00000578415 TSEN54-008 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000580013 TSEN54-010 processed_transcript Homo_sapiens 0 497
ENST00000583173 TSEN54-007 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000583818 TSEN54-011 nonsense_mediated_decay Homo_sapiens 0 470

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