C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142016 Frmd5-008 ENSMUSG00000027238 10090 - 2:121561385-121807057 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyMuscleENSMUST00000142016
Transcript ID Kidney Muscle
ENSMUST00000142016 0.026±0.00 0.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_00067Y CIL_00067Y_0002 CGP 2:121506723-121807087
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000402883 FRMD5-009 protein_coding Homo_sapiens 0 1170
ENST00000417257 FRMD5-001 protein_coding Homo_sapiens 0 1170
ENST00000421674 FRMD5-003 nonsense_mediated_decay Homo_sapiens 0 603
ENST00000449926 FRMD5-006 protein_coding Homo_sapiens 0 876
ENST00000451277 FRMD5-010 nonsense_mediated_decay Homo_sapiens 0 913
ENST00000458630 FRMD5-004 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000479319 FRMD5-007 retained_intron Homo_sapiens 0 357
ENST00000484674 FRMD5-005 protein_coding Homo_sapiens 0 876
ENST00000558108 FRMD5-012 protein_coding Homo_sapiens 0 621
ENST00000618556 FRMD5-201 protein_coding Homo_sapiens 0 431

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