C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142295 Prdm15-002 ENSMUSG00000014039 10090 - 16:97791877-97851783 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000142295
Transcript ID Adipose Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000142295 0.972±0.16 0.418±0.00 1.147±0.21 0.251±0.00 0.393±0.06 0.576±0.00 0.191±0.04 1.466±0.53 0.788±0.16 0.399±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VK CIL_0001VK_0002 CGP 16:97741933-97851850
CIL_0001D3 CIL_0001D3_0003 CGP 16:97791467-97922633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269844 PRDM15-201 protein_coding Homo_sapiens 0 2331
ENST00000398548 PRDM15-018 protein_coding Homo_sapiens 0 2331
ENST00000422911 PRDM15-010 protein_coding Homo_sapiens 0 2331
ENST00000433067 PRDM15-001 nonsense_mediated_decay Homo_sapiens 0 2331
ENST00000441787 PRDM15-015 nonsense_mediated_decay Homo_sapiens 0 2484
ENST00000447016 PRDM15-002 nonsense_mediated_decay Homo_sapiens 0 2331
ENST00000447207 PRDM15-202 protein_coding Homo_sapiens 0 2331
ENST00000449395 PRDM15-016 nonsense_mediated_decay Homo_sapiens 0 2298
ENST00000465955 PRDM15-014 processed_transcript Homo_sapiens 0 292
ENST00000470586 PRDM15-004 processed_transcript Homo_sapiens 0 891
ENST00000486812 PRDM15-003 retained_intron Homo_sapiens 0 891
ENST00000489661 PRDM15-009 retained_intron Homo_sapiens 0 261
ENST00000491486 PRDM15-011 processed_transcript Homo_sapiens 0 287
ENST00000495217 PRDM15-012 processed_transcript Homo_sapiens 0 767

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