C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyhomeotic-like 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143632 Phc2-005 ENSMUSG00000028796 10090 + 4:128727581-128752881 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverPlacentaENSMUST00000143632
Transcript ID Liver Placenta
ENSMUST00000143632 2.082±0.00 6.224±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F1 CIL_0008F1_0002 VISTA 4:128414851-129016970
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000792 IDA heterochromatin
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007283 IGI spermatogenesis
GO:0031519 IDA PcG protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257118 PHC2-001 protein_coding Homo_sapiens 0 1555
ENST00000373418 PHC2-003 protein_coding Homo_sapiens 0 1555
ENST00000373422 PHC2-002 protein_coding Homo_sapiens 0 1555
ENST00000431992 PHC2-201 protein_coding Homo_sapiens 0 1555
ENST00000467894 PHC2-006 processed_transcript Homo_sapiens 0 798
ENST00000473158 PHC2-008 processed_transcript Homo_sapiens 0 353
ENST00000485928 PHC2-004 processed_transcript Homo_sapiens 0 1144
ENST00000486897 PHC2-005 processed_transcript Homo_sapiens 0 828
ENST00000493483 PHC2-007 processed_transcript Homo_sapiens 0 556

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