C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLAIN motif family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143829 Slain2-002 ENSMUSG00000036087 10090 + 5:72914625-72978829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000143829
Transcript ID Adipose Bladder Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000143829 2.965±0.66 5.072±0.34 2.922±0.90 6.796±1.61 1.585±0.02 1.261±0.30 4.071±0.95 17.069±1.61 2.983±0.97 1.760±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MX CIL_0001MX_0002 CGP 5:72755718-72978829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0007020 ISS microtubule nucleation
GO:0015630 ISS microtubule cytoskeleton
GO:0031113 IMP regulation of microtubule polymerization
GO:0031116 ISS positive regulation of microtubule polymerization
GO:0031122 IMP cytoplasmic microtubule organization
GO:0035371 ISS microtubule plus-end

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264313 SLAIN2-001 protein_coding Homo_sapiens 0 1838
ENST00000505131 SLAIN2-011 nonsense_mediated_decay Homo_sapiens 1e-30 137
ENST00000506375 SLAIN2-013 processed_transcript Homo_sapiens 0 505
ENST00000510595 SLAIN2-012 protein_coding Homo_sapiens 0 673
ENST00000512093 SLAIN2-009 protein_coding Homo_sapiens 0 2244
ENST00000546397 RP11-175P13.3-003 processed_transcript Homo_sapiens 4e-24 115
ENST00000548404 RP11-175P13.3-002 processed_transcript Homo_sapiens 7e-24 115
ENST00000550096 RP11-175P13.3-004 processed_transcript Homo_sapiens 6e-24 115

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