C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144145 Arhgef16-003 ENSMUSG00000029032 10090 - 4:154278486-154299892 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000144145
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000144145 0.063±0.00 0.020±0.00 0.962±0.00 0.060±0.00 5.477±0.10 0.032±0.01 3.095±0.17 0.311±0.15 1.064±0.11 0.033±0.00 0.368±0.19 5.393±2.34 0.059±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099V CIL_00099V_0002 VISTA 4:154093365-154697126
CIL_0007TB CIL_0007TB_0002 VISTA 4:154156294-154757167

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378371 ARHGEF16-003 protein_coding Homo_sapiens 0 667
ENST00000378373 ARHGEF16-002 protein_coding Homo_sapiens 0 656
ENST00000378378 ARHGEF16-001 protein_coding Homo_sapiens 0 656
ENST00000418137 ARHGEF16-007 protein_coding Homo_sapiens 0 287
ENST00000445297 ARHGEF16-005 protein_coding Homo_sapiens 0 488
ENST00000464620 ARHGEF16-006 retained_intron Homo_sapiens 0 289
ENST00000485984 ARHGEF16-004 retained_intron Homo_sapiens 0 287

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