C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: kit oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144270 Kit-001 ENSMUSG00000005672 10090 + 5:75574916-75656722 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000144270
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000144270 2.405±0.81 0.503±0.04 2.214±0.04 4.675±0.34 4.055±1.83 6.142±1.72 1.042±0.46 2.874±0.71 2.605±1.27 15.599±2.36 0.141±0.03 5.463±2.21 8.596±4.31 2.194±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CJ CIL_0001CJ_0002 CGP 5:75152291-75656722
CIL_0001CK CIL_0001CK_0002 CGP 5:75574916-75978458

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002318 IGI myeloid progenitor cell differentiation
GO:0002320 IGI lymphoid progenitor cell differentiation
GO:0002573 IMP myeloid leukocyte differentiation
GO:0004716 IEA receptor signaling protein tyrosine kinase activity
GO:0005020 IDA stem cell factor receptor activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005911 IDA cell-cell junction
GO:0006468 IDA protein phosphorylation
GO:0006687 IMP glycosphingolipid metabolic process
GO:0006935 TAS chemotaxis
GO:0007281 TAS germ cell development
GO:0007286 IMP spermatid development
GO:0008284 IGI positive regulation of cell proliferation
GO:0009314 IMP response to radiation
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0010628 IMP positive regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0018108 IDA peptidyl-tyrosine phosphorylation
GO:0019221 IDA cytokine-mediated signaling pathway
GO:0019955 IEA cytokine binding
GO:0023014 IEA signal transduction by phosphorylation
GO:0030097 IMP hemopoiesis
GO:0030154 TAS cell differentiation
GO:0035234 IGI ectopic germ cell programmed cell death
GO:0035556 IDA intracellular signal transduction
GO:0038093 IEA Fc receptor signaling pathway
GO:0038109 IEA Kit signaling pathway
GO:0043069 IGI negative regulation of programmed cell death
GO:0043406 IGI positive regulation of MAP kinase activity
GO:0043473 IGI pigmentation
GO:0046777 TAS protein autophosphorylation
GO:0048066 IMP developmental pigmentation
GO:0048070 IGI regulation of developmental pigmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288135 KIT-001 protein_coding Homo_sapiens 0 2625
ENST00000412167 KIT-002 protein_coding Homo_sapiens 0 2680
ENST00000512959 KIT-004 retained_intron Homo_sapiens 0 562
ENST00000514582 KIT-003 retained_intron Homo_sapiens 0 255

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