C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0001CJ_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000134853-ENSG00000157404 | CGP | 9606 | 4:54229097-54740715  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000134853  (PDGFRA)platelet-derived growth factor receptor, alpha polypeptide |
ENST00000257290 (PDGFRA-001)
|
54229097-54298247 | protein_coding | |
|
ENST00000461294 (PDGFRA-005)
|
54276751-54278246 | retained_intron | ||
|
ENST00000503856 (PDGFRA-007)
|
54229843-54263776 | protein_coding | ||
|
ENST00000504461 (PDGFRA-006)
|
54230322-54263773 | protein_coding | ||
|
ENST00000507536 (PDGFRA-004)
|
54277176-54281977 | retained_intron | ||
|
ENST00000508170 (PDGFRA-002)
|
54229280-54265353 | protein_coding | ||
|
ENST00000509092 (PDGFRA-003)
|
54229292-54280758 | retained_intron | ||
|
ENST00000509490 (PDGFRA-008)
|
54229311-54281978 | nonsense_mediated_decay | ||
|
ENST00000512143 (PDGFRA-009)
|
54229293-54261412 | protein_coding | ||
|
ENST00000512522 (PDGFRA-010)
|
54243575-54263762 | protein_coding | ||
|
ENSG00000145216 (FIP1L1) factor interacting with PAPOLA and CPSF1 |
ENST00000306932 (FIP1L1-003)
|
53377696-53459621 | protein_coding | |
|
ENST00000337488 (FIP1L1-001)
|
53377645-53459668 | protein_coding | ||
|
ENST00000358575 (FIP1L1-002)
|
53377645-53459668 | protein_coding | ||
|
ENST00000504094 (FIP1L1-010)
|
53428066-53460861 | protein_coding | ||
|
ENST00000505125 (FIP1L1-004)
|
53377803-53459621 | retained_intron | ||
|
ENST00000507166 (FIP1L1-005)
|
53377839-54295272 | protein_coding | ||
|
ENST00000507206 (FIP1L1-013)
|
53458551-53459402 | retained_intron | ||
|
ENST00000507922 (FIP1L1-009)
|
53377671-53428221 | protein_coding | ||
|
ENST00000510668 (FIP1L1-015)
|
53378218-53389849 | processed_transcript | ||
|
ENST00000511055 (FIP1L1-014)
|
53442253-53453131 | retained_intron | ||
|
ENST00000511376 (FIP1L1-012)
|
53377643-53390597 | processed_transcript | ||
|
ENST00000513008 (FIP1L1-008)
|
53425836-53459621 | retained_intron | ||
|
ENST00000513975 (FIP1L1-006)
|
53377843-53440983 | retained_intron | ||
|
ENST00000514543 (FIP1L1-011)
|
53382278-53459618 | nonsense_mediated_decay | ||
|
ENSG00000157404 (KIT) v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog |
ENST00000288135 (KIT-001)
|
54657918-54740715 | protein_coding | |
|
ENST00000412167 (KIT-002)
|
54657918-54739011 | protein_coding | ||
|
ENST00000512959 (KIT-004)
|
54729292-54733401 | retained_intron | ||
|
ENST00000514582 (KIT-003)
|
54657939-54695906 | retained_intron | ||
|
ENSG00000248184 (RP11-231C18.1) |
ENST00000511634 (RP11-231C18.1-001)
|
54332892-54355954 | lincRNA | |
|
ENSG00000248518 (RP11-231C18.2) |
ENST00000508241 (RP11-231C18.2-001)
|
54376002-54376752 | lincRNA | |
|
ENSG00000250456 (AC006552.1) |
ENST00000508484 (AC006552.1-001)
|
54603211-54607131 | lincRNA | |
|
ENSG00000251264 (RP11-545H22.1) |
ENST00000512628 (RP11-545H22.1-001)
|
54440502-54446723 | lincRNA | |
| CIL_0001CJ_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000029231-ENSMUSG00000005672 | CGP | 10090 | 5:75152291-75656722 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000005672 (Kit) kit oncogene |
ENSMUST00000005815 (Kit-002)
|
75574955-75656722 | protein_coding | |
|
ENSMUST00000136002 (Kit-004)
|
75641083-75645984 | processed_transcript | ||
|
ENSMUST00000143221 (Kit-006)
|
75610574-75620949 | processed_transcript | ||
|
ENSMUST00000144270 (Kit-001)
|
75574916-75656722 | protein_coding | ||
|
ENSMUST00000148993 (Kit-003)
|
75645697-75652856 | processed_transcript | ||
|
ENSMUST00000151357 (Kit-005)
|
75637115-75639024 | processed_transcript | ||
|
ENSMUSG00000029231 (Pdgfra) platelet derived growth factor receptor, alpha polypeptide |
ENSMUST00000000476 (Pdgfra-201)
|
75152291-75198204 | protein_coding | |
|
ENSMUST00000168162 (Pdgfra-202)
|
75156166-75198204 | protein_coding | ||
|
ENSMUSG00000101430 (RP23-55P22.1) predicted gene 28713 |
ENSMUST00000187957 (RP23-55P22.1-001)
|
75223092-75247795 | lincRNA | |
|
ENSMUSG00000101461 (RP23-149H20.1) predicted gene 29465 |
ENSMUST00000189090 (RP23-149H20.1-001)
|
75347388-75353252 | lincRNA | |
Expression Patterns
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