C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157404-ENSG00000128052 CGP 9606 4:54657918-55125589
GeneTranscriptPositionBiotype
ENSG00000128052 (KDR)
kinase insert domain receptor (a type III receptor tyrosine kinase) 		ENST00000263923 (KDR-001) 55078477-55125589 protein_coding
ENST00000509309 (KDR-003) 55094850-55096720 retained_intron
ENST00000512566 (KDR-002) 55104593-55125293 retained_intron
ENSG00000157404 (KIT)
v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 		ENST00000288135 (KIT-001) 54657918-54740715 protein_coding
ENST00000412167 (KIT-002) 54657918-54739011 protein_coding
ENST00000512959 (KIT-004) 54729292-54733401 retained_intron
ENST00000514582 (KIT-003) 54657939-54695906 retained_intron
ENSG00000244034 (RN7SL424P)
RNA, 7SL, cytoplasmic 424, pseudogene 		ENST00000468013 (RN7SL424P-201) 55063738-55064026 misc_RNA
ENSG00000249727 (RP11-273B19.2)
 ENST00000512898 (RP11-273B19.2-001) 54836161-54845402 lincRNA
ENSG00000250646 (RP11-530I17.1)
 ENST00000511222 (RP11-530I17.1-001) 55053060-55092534 antisense
ENSG00000251256 (RP11-273B19.1)
 ENST00000514413 (RP11-273B19.1-001) 54845568-54859241 lincRNA
ENSG00000252815 (RNU6-410P)
RNA, U6 small nuclear 410, pseudogene 		ENST00000517006 (RNU6-410P-201) 55031965-55032071 snRNA
ENSG00000264332 (AC111194.1)
 ENST00000582628 (AC111194.1-201) 55010833-55010932 miRNA
CIL_0001CK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005672-ENSMUSG00000062960 CGP 10090 5:75574916-75978458
GeneTranscriptPositionBiotype
ENSMUSG00000005672 (Kit)
kit oncogene 		ENSMUST00000005815 (Kit-002) 75574955-75656722 protein_coding
ENSMUST00000136002 (Kit-004) 75641083-75645984 processed_transcript
ENSMUST00000143221 (Kit-006) 75610574-75620949 processed_transcript
ENSMUST00000144270 (Kit-001) 75574916-75656722 protein_coding
ENSMUST00000148993 (Kit-003) 75645697-75652856 processed_transcript
ENSMUST00000151357 (Kit-005) 75637115-75639024 processed_transcript
ENSMUSG00000062960 (Kdr)
kinase insert domain protein receptor 		ENSMUST00000113516 (Kdr-001) 75932827-75978458 protein_coding
ENSMUST00000149573 (Kdr-002) 75961244-75978458 retained_intron
ENSMUSG00000100936 (RP23-329A21.2)
predicted gene 28865 		ENSMUST00000187685 (RP23-329A21.2-001) 75849238-75852958 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CK_0001ENSG00000128052ENST00000263923ENST00000509309ENST00000512566ENSG00000157404ENST00000288135ENST00000412167ENST00000512959ENST00000514582ENSG00000244034ENST00000468013ENSG00000249727ENST00000512898ENSG00000250646ENST00000511222ENSG00000251256ENST00000514413ENSG00000252815ENST00000517006ENSG00000264332ENST00000582628CIL_0001CK_0002ENSMUSG00000005672ENSMUST00000005815ENSMUST00000136002ENSMUST00000143221ENSMUST00000144270ENSMUST00000148993ENSMUST00000151357ENSMUSG00000062960ENSMUST00000113516ENSMUST00000149573ENSMUSG00000100936ENSMUST00000187685
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CK_0001ENSG00000128052ENST00000263923ENST00000512566ENSG00000157404ENST00000288135ENST00000412167ENST00000514582ENSG00000244034ENST00000468013ENSG00000249727ENST00000512898ENSG00000250646ENST00000511222ENSG00000251256ENST00000514413ENSG00000252815ENST00000517006ENSG00000264332ENST00000582628CIL_0001CK_0002ENSMUSG00000005672ENSMUST00000005815ENSMUST00000144270ENSMUST00000148993ENSMUSG00000062960ENSMUST00000113516ENSMUST00000149573ENSMUSG00000100936ENSMUST00000187685
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128052 ENST00000263923 11.323±0.00 9.934±0.00 2.753±0.00 1.054±0.89 6.022±3.27 5.527±3.52 5.579±3.20 8.228±1.58 4.929±0.99 11.062±2.76 1.141±0.77 2.975±0.89 38.066±5.52 3.172±2.35
ENST00000509309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512566 N/A N/A 2.805±0.00 N/A 3.589±0.00 N/A 1.140±0.00 2.709±0.00 1.709±0.00 4.595±0.00 N/A 1.317±0.00 N/A N/A
ENSG00000157404 ENST00000288135 2.362±0.00 N/A N/A 2.212±0.00 2.271±0.00 7.698±0.00 0.370±0.00 N/A N/A 1.654±0.00 N/A 1.353±0.00 0.526±0.10 1.969±1.30
ENST00000412167 N/A N/A N/A N/A 3.405±0.00 N/A 0.405±0.00 N/A N/A 1.445±0.00 N/A N/A N/A N/A
ENST00000512959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.195±0.00 N/A
ENSG00000244034 ENST00000468013 N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249727 ENST00000512898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.536±0.04
ENSG00000250646 ENST00000511222 N/A 0.139±0.00 N/A N/A N/A N/A N/A N/A 0.414±0.00 0.684±0.00 0.139±0.00 N/A 0.121±0.00 N/A
ENSG00000251256 ENST00000514413 N/A N/A N/A N/A N/A N/A N/A N/A 0.925±0.00 N/A N/A N/A N/A 0.483±0.26
ENSG00000252815 ENST00000517006 N/A N/A N/A N/A 1.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264332 ENST00000582628 1.167±0.00 2.233±0.00 N/A 1.575±0.00 0.512±0.00 1.370±0.00 0.480±0.00 N/A N/A N/A N/A 19.820±0.00 N/A 1.352±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005672 ENSMUST00000005815 2.701±0.97 2.081±0.22 1.770±0.16 6.903±2.89 17.323±4.26 22.478±4.39 0.366±0.00 3.519±0.72 2.054±1.40 42.210±20.67 0.085±0.01 11.035±4.52 5.552±4.34 1.928±1.15
ENSMUST00000136002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144270 2.405±0.81 0.503±0.04 2.214±0.04 4.675±0.34 4.055±1.83 6.142±1.72 1.042±0.46 2.874±0.71 2.605±1.27 15.599±2.36 0.141±0.03 5.463±2.21 8.596±4.31 2.194±0.85
ENSMUST00000148993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.318±0.00 N/A N/A N/A
ENSMUST00000151357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000062960 ENSMUST00000113516 23.996±2.94 16.341±3.39 5.671±0.11 6.131±2.65 15.108±2.49 3.452±0.74 22.662±2.22 17.049±0.42 4.143±0.89 63.705±3.77 6.266±1.82 11.081±1.70 9.610±3.55 0.618±0.16
ENSMUST00000149573 N/A 4.974±0.78 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100936 ENSMUST00000187685 N/A 0.134±0.00 N/A 0.025±0.00 0.169±0.00 N/A N/A N/A 0.014±0.00 N/A N/A N/A 0.114±0.09 N/A

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