C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157404-ENSG00000128052 CGP 9606 4:54657918-55125589
GeneTranscriptPositionBiotype
ENSG00000128052 (KDR)
kinase insert domain receptor (a type III receptor tyrosine kinase) 		ENST00000263923 (KDR-001) 55078477-55125589 protein_coding
ENST00000509309 (KDR-003) 55094850-55096720 retained_intron
ENST00000512566 (KDR-002) 55104593-55125293 retained_intron
ENSG00000157404 (KIT)
v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 		ENST00000288135 (KIT-001) 54657918-54740715 protein_coding
ENST00000412167 (KIT-002) 54657918-54739011 protein_coding
ENST00000512959 (KIT-004) 54729292-54733401 retained_intron
ENST00000514582 (KIT-003) 54657939-54695906 retained_intron
ENSG00000244034 (RN7SL424P)
RNA, 7SL, cytoplasmic 424, pseudogene 		ENST00000468013 (RN7SL424P-201) 55063738-55064026 misc_RNA
ENSG00000249727 (RP11-273B19.2)
 ENST00000512898 (RP11-273B19.2-001) 54836161-54845402 lincRNA
ENSG00000250646 (RP11-530I17.1)
 ENST00000511222 (RP11-530I17.1-001) 55053060-55092534 antisense
ENSG00000251256 (RP11-273B19.1)
 ENST00000514413 (RP11-273B19.1-001) 54845568-54859241 lincRNA
ENSG00000252815 (RNU6-410P)
RNA, U6 small nuclear 410, pseudogene 		ENST00000517006 (RNU6-410P-201) 55031965-55032071 snRNA
ENSG00000264332 (AC111194.1)
 ENST00000582628 (AC111194.1-201) 55010833-55010932 miRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001CK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005672-ENSMUSG00000062960 CGP 10090 5:75574916-75978458
GeneTranscriptPositionBiotype
ENSMUSG00000005672 (Kit)
kit oncogene 		ENSMUST00000005815 (Kit-002) 75574955-75656722 protein_coding
ENSMUST00000136002 (Kit-004) 75641083-75645984 processed_transcript
ENSMUST00000143221 (Kit-006) 75610574-75620949 processed_transcript
ENSMUST00000144270 (Kit-001) 75574916-75656722 protein_coding
ENSMUST00000148993 (Kit-003) 75645697-75652856 processed_transcript
ENSMUST00000151357 (Kit-005) 75637115-75639024 processed_transcript
ENSMUSG00000062960 (Kdr)
kinase insert domain protein receptor 		ENSMUST00000113516 (Kdr-001) 75932827-75978458 protein_coding
ENSMUST00000149573 (Kdr-002) 75961244-75978458 retained_intron
ENSMUSG00000100936 (RP23-329A21.2)
predicted gene 28865 		ENSMUST00000187685 (RP23-329A21.2-001) 75849238-75852958 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CK_0001ENSG00000128052ENST00000263923ENST00000509309ENST00000512566ENSG00000157404ENST00000288135ENST00000412167ENST00000512959ENST00000514582ENSG00000244034ENST00000468013ENSG00000249727ENST00000512898ENSG00000250646ENST00000511222ENSG00000251256ENST00000514413ENSG00000252815ENST00000517006ENSG00000264332ENST00000582628CIL_0001CK_0002ENSMUSG00000005672ENSMUST00000005815ENSMUST00000136002ENSMUST00000143221ENSMUST00000144270ENSMUST00000148993ENSMUST00000151357ENSMUSG00000062960ENSMUST00000113516ENSMUST00000149573ENSMUSG00000100936ENSMUST00000187685
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CK_0001ENSG00000128052ENST00000263923ENST00000512566ENSG00000157404ENST00000288135ENST00000412167ENST00000514582ENSG00000244034ENST00000468013ENSG00000249727ENST00000512898ENSG00000250646ENST00000511222ENSG00000251256ENST00000514413ENSG00000252815ENST00000517006ENSG00000264332ENST00000582628CIL_0001CK_0002ENSMUSG00000005672ENSMUST00000005815ENSMUST00000144270ENSMUST00000148993ENSMUSG00000062960ENSMUST00000113516ENSMUST00000149573ENSMUSG00000100936ENSMUST00000187685
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128052 ENST00000263923 11.323±0.00 9.934±0.00 2.753±0.00 1.054±0.89 6.022±3.27 5.527±3.52 5.579±3.20 8.228±1.58 4.929±0.99 11.062±2.76 1.141±0.77 2.975±0.89 38.066±5.52 3.172±2.35
ENST00000509309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512566 N/A N/A 2.805±0.00 N/A 3.589±0.00 N/A 1.140±0.00 2.709±0.00 1.709±0.00 4.595±0.00 N/A 1.317±0.00 N/A N/A
ENSG00000157404 ENST00000288135 2.362±0.00 N/A N/A 2.212±0.00 2.271±0.00 7.698±0.00 0.370±0.00 N/A N/A 1.654±0.00 N/A 1.353±0.00 0.526±0.10 1.969±1.30
ENST00000412167 N/A N/A N/A N/A 3.405±0.00 N/A 0.405±0.00 N/A N/A 1.445±0.00 N/A N/A N/A N/A
ENST00000512959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.195±0.00 N/A
ENSG00000244034 ENST00000468013 N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249727 ENST00000512898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.536±0.04
ENSG00000250646 ENST00000511222 N/A 0.139±0.00 N/A N/A N/A N/A N/A N/A 0.414±0.00 0.684±0.00 0.139±0.00 N/A 0.121±0.00 N/A
ENSG00000251256 ENST00000514413 N/A N/A N/A N/A N/A N/A N/A N/A 0.925±0.00 N/A N/A N/A N/A 0.483±0.26
ENSG00000252815 ENST00000517006 N/A N/A N/A N/A 1.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264332 ENST00000582628 1.167±0.00 2.233±0.00 N/A 1.575±0.00 0.512±0.00 1.370±0.00 0.480±0.00 N/A N/A N/A N/A 19.820±0.00 N/A 1.352±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005672 ENSMUST00000005815 2.701±0.97 2.081±0.22 1.770±0.16 6.903±2.89 17.323±4.26 22.478±4.39 0.366±0.00 3.519±0.72 2.054±1.40 42.210±20.67 0.085±0.01 11.035±4.52 5.552±4.34 1.928±1.15
ENSMUST00000136002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144270 2.405±0.81 0.503±0.04 2.214±0.04 4.675±0.34 4.055±1.83 6.142±1.72 1.042±0.46 2.874±0.71 2.605±1.27 15.599±2.36 0.141±0.03 5.463±2.21 8.596±4.31 2.194±0.85
ENSMUST00000148993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.318±0.00 N/A N/A N/A
ENSMUST00000151357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000062960 ENSMUST00000113516 23.996±2.94 16.341±3.39 5.671±0.11 6.131±2.65 15.108±2.49 3.452±0.74 22.662±2.22 17.049±0.42 4.143±0.89 63.705±3.77 6.266±1.82 11.081±1.70 9.610±3.55 0.618±0.16
ENSMUST00000149573 N/A 4.974±0.78 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100936 ENSMUST00000187685 N/A 0.134±0.00 N/A 0.025±0.00 0.169±0.00 N/A N/A N/A 0.014±0.00 N/A N/A N/A 0.114±0.09 N/A

Loading