C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUB and Sushi multiple domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144298 Csmd2-006 ENSMUSG00000028804 10090 + 4:127988044-128419617 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLungOvaryPlacentaENSMUST00000144298
Transcript ID Bladder Breast Colon Lung Ovary Placenta
ENSMUST00000144298 0.011±0.00 0.020±0.00 0.053±0.00 0.015±0.01 0.033±0.00 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N2 CIL_0001N2_0002 CGP 4:127987857-128567656

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000241312 CSMD2-001 nonsense_mediated_decay Homo_sapiens 0 4996
ENST00000338325 CSMD2-004 protein_coding Homo_sapiens 9.94922e-44 182
ENST00000373380 CSMD2-002 protein_coding Homo_sapiens 0 784
ENST00000373381 CSMD2-201 protein_coding Homo_sapiens 0 5180
ENST00000373388 CSMD2-202 protein_coding Homo_sapiens 0 4996
ENST00000471438 CSMD2-007 processed_transcript Homo_sapiens 0 209
ENST00000619121 CSMD2-203 protein_coding Homo_sapiens 0 4996

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