C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SHANK-associated RH domain interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144816 Sharpin-003 ENSMUSG00000022552 10090 - 15:76347041-76351075 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000144816
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000144816 7.307±1.09 7.699±1.30 9.935±2.16 11.230±4.34 9.445±2.74 11.198±1.23 3.269±0.42 6.459±0.58 5.894±1.62 12.029±1.13 8.153±2.60 3.739±1.39 3.594±2.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026W CIL_00026W_0002 CGP 15:76343523-76351111
CIL_0006Y3 CIL_0006Y3_0003 CGP 15:76347040-76354380

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359551 SHARPIN-002 nonsense_mediated_decay Homo_sapiens 1.99965e-42 178
ENST00000398712 SHARPIN-001 protein_coding Homo_sapiens 0 196
ENST00000532536 SHARPIN-011 protein_coding Homo_sapiens 0 191

Loading