C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SHANK-associated RH domain interactor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359551 SHARPIN-002 ENSG00000179526 9606 - 8:144098637-144104237 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_00026W CIL_00026W_0001 CGP 8:144095027-144108124
CIL_0006Y3 CIL_0006Y3_0002 CGP 8:144098633-144108124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0010803 IDA regulation of tumor necrosis factor-mediated signaling pathway
GO:0030054 IEA cell junction
GO:0031593 IDA polyubiquitin binding
GO:0043123 IDA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0050728 ISS negative regulation of inflammatory response
GO:0071797 IDA LUBAC complex
GO:0097039 IDA protein linear polyubiquitination
GO:2000348 IDA regulation of CD40 signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000144816 Sharpin-003 retained_intron Mus_musculus 1.99965e-42 178
ENSMUST00000154477 Sharpin-004 retained_intron Mus_musculus 1.99965e-42 178
ENSMUST00000023211 Sharpin-001 protein_coding Mus_musculus 1.99965e-42 178
ENSMUST00000147001 Sharpin-009 retained_intron Mus_musculus 6.00036e-42 176
ENSMUST00000123112 Sharpin-002 retained_intron Mus_musculus 6.00036e-42 176
ENSMUST00000159429 Sharpin-008 protein_coding Mus_musculus 1e-39 169

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