C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145353 Cnot6-001 ENSMUSG00000020362 10090 - 11:49671503-49712723 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000145353
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000145353 4.487±3.23 2.298±0.59 9.147±4.23 14.150±8.91 4.141±1.73 3.517±0.79 1.637±0.69 4.824±1.43 5.534±4.02 9.056±2.08 0.842±0.54 10.319±3.57 7.242±3.63 3.951±1.92

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004532 ISS exoribonuclease activity
GO:0004535 ISS poly(A)-specific ribonuclease activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008284 IEA positive regulation of cell proliferation
GO:0010606 IEA positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 IEA membrane
GO:0030014 ISS CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:0043928 ISS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0046872 IEA metal ion binding
GO:0070966 ISS nuclear-transcribed mRNA catabolic process, no-go decay
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic
GO:2000327 ISS positive regulation of ligand-dependent nuclear receptor transcription coactivator activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261951 CNOT6-201 protein_coding Homo_sapiens 0 3644
ENST00000393356 CNOT6-001 protein_coding Homo_sapiens 0 3330
ENST00000502447 CNOT6-003 processed_transcript Homo_sapiens 0 514
ENST00000504343 CNOT6-004 protein_coding Homo_sapiens 0 782
ENST00000507016 CNOT6-005 processed_transcript Homo_sapiens 0 265
ENST00000510148 CNOT6-006 processed_transcript Homo_sapiens 0 324
ENST00000534111 TMPRSS4-001 protein_coding Homo_sapiens 3.9937e-43 182
ENST00000618123 CNOT6-202 protein_coding Homo_sapiens 0 3330

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