C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protease, serine 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534111 TMPRSS4-001 ENSG00000137648 9606 + 11:118077038-118121890 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyMusclePlacentaENST00000534111
Transcript ID Adipose Adrenal Breast Colon Kidney Muscle Placenta
ENST00000534111 0.039±0.00 0.056±0.00 0.038±0.00 1.548±0.00 0.062±0.00 0.017±0.00 0.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002BW CIL_0002BW_0002 CGP 11:118077012-118152888

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004252 IEA:NAS serine-type endopeptidase activity
GO:0005044 IEA scavenger receptor activity
GO:0005515 IEA protein binding
GO:0006508 IEA:NAS proteolysis
GO:0006898 IEA receptor-mediated endocytosis
GO:0016020 IEA membrane
GO:0016021 IEA:NAS integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034599 Tmprss4-001 protein_coding Mus_musculus 0 1151
ENSMUST00000163237 Tmprss4-003 processed_transcript Mus_musculus 0 1068
ENSMUST00000170069 Tmprss4-002 nonsense_mediated_decay Mus_musculus 0 1016
ENSMUST00000165263 Tmprss4-004 nonsense_mediated_decay Mus_musculus 0 839
ENSMUST00000163945 Tmprss4-005 retained_intron Mus_musculus 0 621
ENSMUST00000145353 Cnot6-001 protein_coding Mus_musculus 3.9937e-43 182

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