C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: striatin, calmodulin binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145910 Strn-001 ENSMUSG00000024077 10090 - 17:78649913-78737196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000145910
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000145910 1.438±0.32 3.539±0.64 2.987±0.82 2.689±0.86 1.945±1.04 2.699±0.89 1.928±0.83 1.752±0.62 1.574±0.60 3.076±0.72 0.637±0.17 6.119±0.94 3.840±1.16 1.198±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MU CIL_0000MU_0002 CGP 17:78508063-78737196
CIL_0000MV CIL_0000MV_0002 CGP 17:78649913-78835381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000159 IEA protein phosphatase type 2A complex
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005923 IEA tight junction
GO:0008285 IEA negative regulation of cell proliferation
GO:0016020 IEA membrane
GO:0016055 IEA Wnt signaling pathway
GO:0030331 IEA estrogen receptor binding
GO:0032403 IEA protein complex binding
GO:0042995 IEA cell projection
GO:0051721 IEA protein phosphatase 2A binding
GO:0070016 IEA armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000085524 STRN-201 protein_coding Danio_rerio 0 399
ENST00000263918 STRN-001 protein_coding Homo_sapiens 0 3489
ENST00000379213 STRN-201 protein_coding Homo_sapiens 0 1618
ENST00000412374 LSP1P3-001 processed_pseudogene Homo_sapiens 0 318
ENST00000495595 STRN-002 retained_intron Homo_sapiens 0 1040

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