C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: striatin, calmodulin binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379213 STRN-201 ENSG00000115808 9606 - 2:36849406-36966471 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartLungMuscleOvaryPlacentaTestisENST00000379213
Transcript ID Bladder Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000379213 1.166±0.00 3.277±0.00 3.225±0.47 2.037±0.00 1.915±0.00 4.796±0.00 0.858±0.00 1.371±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MU CIL_0000MU_0001 CGP 2:36696690-36966472
CIL_0000MV CIL_0000MV_0001 CGP 2:36843640-37084342

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000159 IDA protein phosphatase type 2A complex
GO:0005515 IPI:IEA protein binding
GO:0005516 ISS calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005923 IDA tight junction
GO:0007626 ISS locomotory behavior
GO:0008285 IMP negative regulation of cell proliferation
GO:0014069 ISS postsynaptic density
GO:0016020 ISS membrane
GO:0016055 IMP Wnt signaling pathway
GO:0016358 ISS dendrite development
GO:0030331 IPI estrogen receptor binding
GO:0032403 IDA protein complex binding
GO:0043025 ISS neuronal cell body
GO:0043197 ISS dendritic spine
GO:0045211 ISS postsynaptic membrane
GO:0051721 IDA protein phosphatase 2A binding
GO:0070016 IPI armadillo repeat domain binding
GO:0070830 NAS tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024881 Strn-002 protein_coding Mus_musculus 0 1618
ENSMUST00000145910 Strn-001 protein_coding Mus_musculus 0 1618
ENSMUST00000145480 Strn-003 protein_coding Mus_musculus 0 497
ENSMUST00000112483 Gm12079-001 processed_pseudogene Mus_musculus 0 318

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