C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146552 Lrp8-009 ENSMUSG00000028613 10090 + 4:107803251-107872816 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000146552
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000146552 0.128±0.08 0.878±0.31 0.551±0.34 0.687±0.13 0.195±0.07 0.796±0.34 0.806±0.72 0.364±0.11 3.825±1.31 9.751±12.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0002 VISTA 4:107302048-107904613

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306052 LRP8-001 protein_coding Homo_sapiens 0 1764
ENST00000347547 LRP8-011 protein_coding Homo_sapiens 0 1764
ENST00000354412 LRP8-003 protein_coding Homo_sapiens 0 1251
ENST00000371454 LRP8-002 protein_coding Homo_sapiens 0 1967
ENST00000459674 LRP8-006 retained_intron Homo_sapiens 0 1679
ENST00000460214 LRP8-007 processed_transcript Homo_sapiens 0 689
ENST00000465675 LRP8-004 protein_coding Homo_sapiens 0 2628
ENST00000475501 LRP8-009 protein_coding Homo_sapiens 0 494
ENST00000480045 LRP8-005 nonsense_mediated_decay Homo_sapiens 0 1764
ENST00000481431 LRP8-008 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000613948 LRP8-201 protein_coding Homo_sapiens 0 1230

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