C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SHANK-associated RH domain interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147001 Sharpin-009 ENSMUSG00000022552 10090 - 15:76347118-76348195 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverMuscleOvaryENSMUST00000147001
Transcript ID Adipose Adrenal Breast Heart Liver Muscle Ovary
ENSMUST00000147001 10.785±0.00 13.799±0.00 19.421±0.80 6.936±0.82 9.581±1.66 8.308±0.00 9.159±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026W CIL_00026W_0002 CGP 15:76343523-76351111
CIL_0006Y3 CIL_0006Y3_0003 CGP 15:76347040-76354380

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359551 SHARPIN-002 nonsense_mediated_decay Homo_sapiens 6.00036e-42 176
ENST00000398712 SHARPIN-001 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000532536 SHARPIN-011 protein_coding Homo_sapiens 1.99993e-41 172

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