C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysophosphatidylcholine acyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147566 Lpcat1-002 ENSMUSG00000021608 10090 + 13:73467231-73515112 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000147566
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000147566 2.113±0.10 8.038±0.00 5.900±2.94 2.922±0.00 1.502±0.47 1.805±0.49 0.332±0.06 0.485±0.00 5.876±0.55 4.294±1.87 0.290±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q6 CIL_0008Q6_0002 VISTA 13:72998274-73600313
CIL_0003AA CIL_0003AA_0002 CGP 13:73331009-73516422

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0043129 IDA surfactant homeostasis
GO:0045732 IDA positive regulation of protein catabolic process
GO:0060041 IMP retina development in camera-type eye
GO:2001246 IDA negative regulation of phosphatidylcholine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283415 LPCAT1-002 protein_coding Homo_sapiens 0 950
ENST00000475622 LPCAT1-001 nonsense_mediated_decay Homo_sapiens 0 950
ENST00000507282 LPCAT1-006 retained_intron Homo_sapiens 0 198
ENST00000513757 LPCAT1-008 retained_intron Homo_sapiens 0 368
ENST00000514484 LPCAT1-004 processed_transcript Homo_sapiens 0 237
ENST00000611696 AYTL2-201 protein_coding Homo_sapiens 0 950

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