C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA selenocysteine 1 associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147652 Trnau1ap-003 ENSMUSG00000028898 10090 - 4:132311865-132329389 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000147652
Transcript ID Adipose Bladder Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000147652 1.572±0.00 1.439±0.00 2.098±0.26 2.400±0.57 1.210±0.41 2.119±0.58 0.950±0.06 3.435±0.41 4.159±2.42 0.445±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373830 TRNAU1AP-001 protein_coding Homo_sapiens 0 891
ENST00000411406 TRNAU1AP-006 processed_transcript Homo_sapiens 0 213
ENST00000464093 TRNAU1AP-005 processed_transcript Homo_sapiens 0 267
ENST00000464880 TRNAU1AP-007 processed_transcript Homo_sapiens 0 361
ENST00000480930 TRNAU1AP-002 processed_transcript Homo_sapiens 0 1435
ENST00000484775 TRNAU1AP-010 processed_transcript Homo_sapiens 0 719
ENST00000491577 TRNAU1AP-004 processed_transcript Homo_sapiens 0 894
ENST00000495215 TRNAU1AP-008 processed_transcript Homo_sapiens 0 322
ENST00000495995 TRNAU1AP-003 processed_transcript Homo_sapiens 0 758
ENST00000497790 TRNAU1AP-009 processed_transcript Homo_sapiens 0 322

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