C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin-dependent kinase 5, regulatory subunit 1 (p35)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147694 Cdk5r1-002 ENSMUSG00000048895 10090 + 11:80477056-80477923 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyMuscleOvaryPlacentaTestisENSMUST00000147694
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENSMUST00000147694 1.347±0.40 0.300±0.00 450.284±0.00 1.181±0.00 0.219±0.00 0.132±0.00 0.360±0.00 3.335±2.81 10.835±2.41 0.953±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RM CIL_0005RM_0004 CGP 11:80428615-80481184
CIL_0005RL CIL_0005RL_0003 CGP 11:80477023-80780025

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IGI neuron migration
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008092 TAS cytoskeletal protein binding
GO:0016533 IEA cyclin-dependent protein kinase 5 holoenzyme complex
GO:0016534 IMP cyclin-dependent protein kinase 5 activator activity
GO:0021549 IMP cerebellum development
GO:0021722 IGI superior olivary nucleus maturation
GO:0021766 IGI hippocampus development
GO:0021819 IGI layer formation in cerebral cortex
GO:0030517 IGI negative regulation of axon extension
GO:0033136 IDA serine phosphorylation of STAT3 protein
GO:0045860 IGI positive regulation of protein kinase activity
GO:0071158 IMP positive regulation of cell cycle arrest
GO:0090314 IDA positive regulation of protein targeting to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313401 CDK5R1-001 protein_coding Homo_sapiens 0 664
ENST00000584716 CDK5R1-002 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000584792 CDK5R1-003 protein_coding Homo_sapiens 0 315

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