C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cyclin-dependent kinase 5, regulatory subunit 1 (p35)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584716 CDK5R1-002 ENSG00000176749 9606 + 17:32487796-32489520 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungENST00000584716
Transcript ID Heart Lung
ENST00000584716 0.173±0.00 0.185±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RM CIL_0005RM_0003 CGP 17:32444261-32491256
CIL_0005RL CIL_0005RL_0002 CGP 17:32486619-32877177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016533 IEA cyclin-dependent protein kinase 5 holoenzyme complex
GO:0016534 IEA cyclin-dependent protein kinase 5 activator activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053413 Cdk5r1-001 protein_coding Mus_musculus 0 399
ENSMUST00000147694 Cdk5r1-002 protein_coding Mus_musculus 0 315
ENSDART00000055262 cdk5r1a-001 protein_coding Danio_rerio 8e-39 165
ENSMUST00000160379 Cdk5r2-001 protein_coding Mus_musculus 3e-33 147

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