C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005RM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005134-ENSDARG00000045087 CGP 7955 12:29897998-29918765
GeneTranscriptPositionBiotype
ENSDARG00000005134 (psmd11b)
proteasome (prosome, macropain) 216S subunit, non-ATPase, 11b 		ENSDART00000016283 (psmd11b-001) 29897998-29911272 protein_coding
ENSDARG00000045087 (cdk5r1b)
cyclin-dependent kinase 5, regulatory subunit 1b (p35) 		ENSDART00000066294 (cdk5r1b-001) 29915718-29918645 protein_coding
ENSDART00000155026 (cdk5r1b-201) 29917714-29918765 protein_coding
CIL_0005RM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060150-ENSDARG00000037916 CGP 7955 3:34889244-34907616
GeneTranscriptPositionBiotype
ENSDARG00000037916 (cdk5r1a)
cyclin-dependent kinase 5, regulatory subunit 1a (p35) 		ENSDART00000055262 (cdk5r1a-001) 34906623-34907616 protein_coding
ENSDARG00000060150 (psmd11a)
proteasome (prosome, macropain) 216S subunit, non-ATPase, 11a 		ENSDART00000084448 (psmd11a-001) 34889244-34902189 protein_coding
ENSDART00000151449 (psmd11a-003) 34889543-34891375 retained_intron
ENSDART00000151537 (psmd11a-002) 34891135-34899265 nonsense_mediated_decay
ENSDART00000154696 (psmd11a-201) 34889251-34902139 protein_coding
CIL_0005RM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108671-ENSG00000176749 CGP 9606 17:32444261-32491256
GeneTranscriptPositionBiotype
ENSG00000108671 (PSMD11)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 		ENST00000261712 (PSMD11-001) 32444261-32483318 protein_coding
ENST00000457654 (PSMD11-004) 32444474-32481471 protein_coding
ENST00000469475 (PSMD11-003) 32480078-32480962 retained_intron
ENST00000481992 (PSMD11-005) 32444512-32447333 retained_intron
ENST00000493026 (PSMD11-002) 32476680-32481024 retained_intron
ENST00000578213 (PSMD11-007) 32444379-32464561 protein_coding
ENST00000578397 (PSMD11-006) 32444504-32477829 retained_intron
ENST00000579451 (PSMD11-008) 32444505-32464567 protein_coding
ENST00000580904 (PSMD11-009) 32445667-32454611 protein_coding
ENST00000584340 (PSMD11-010) 32469072-32479282 nonsense_mediated_decay
ENST00000585265 (PSMD11-011) 32480192-32480982 retained_intron
ENSG00000176749 (CDK5R1)
cyclin-dependent kinase 5, regulatory subunit 1 (p35) 		ENST00000313401 (CDK5R1-001) 32486619-32491256 protein_coding
ENST00000584716 (CDK5R1-002) 32487796-32489520 nonsense_mediated_decay
ENST00000584792 (CDK5R1-003) 32487796-32488619 protein_coding
ENSG00000202100 (Y_RNA)
Y RNA 		ENST00000365230 (Y_RNA.1-532) 32463374-32463482 misc_RNA
CIL_0005RM_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017428-ENSMUSG00000048895 CGP 10090 11:80428615-80481184
GeneTranscriptPositionBiotype
ENSMUSG00000017428 (Psmd11)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 		ENSMUST00000017572 (Psmd11-001) 80428625-80473248 protein_coding
ENSMUST00000125591 (Psmd11-007) 80462615-80471641 nonsense_mediated_decay
ENSMUST00000129500 (Psmd11-005) 80460709-80471714 protein_coding
ENSMUST00000147898 (Psmd11-002) 80428644-80472306 retained_intron
ENSMUST00000148895 (Psmd11-008) 80456368-80471875 protein_coding
ENSMUST00000172615 (Psmd11-011) 80428646-80445959 nonsense_mediated_decay
ENSMUST00000172641 (Psmd11-003) 80428615-80434538 retained_intron
ENSMUST00000172773 (Psmd11-014) 80428665-80460691 nonsense_mediated_decay
ENSMUST00000172847 (Psmd11-013) 80428686-80471539 nonsense_mediated_decay
ENSMUST00000173060 (Psmd11-010) 80428690-80456423 nonsense_mediated_decay
ENSMUST00000173186 (Psmd11-015) 80428686-80456242 nonsense_mediated_decay
ENSMUST00000173565 (Psmd11-012) 80429887-80456427 protein_coding
ENSMUST00000173797 (Psmd11-006) 80462611-80473248 protein_coding
ENSMUST00000173938 (Psmd11-004) 80428623-80471909 protein_coding
ENSMUST00000174743 (Psmd11-009) 80428686-80469882 nonsense_mediated_decay
ENSMUSG00000048895 (Cdk5r1)
cyclin-dependent kinase 5, regulatory subunit 1 (p35) 		ENSMUST00000053413 (Cdk5r1-001) 80477023-80481184 protein_coding
ENSMUST00000147694 (Cdk5r1-002) 80477056-80477923 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005RM_0001ENSDARG00000005134ENSDART00000016283ENSDARG00000045087ENSDART00000066294ENSDART00000155026CIL_0005RM_0002ENSDARG00000037916ENSDART00000055262ENSDARG00000060150ENSDART00000084448ENSDART00000151449ENSDART00000151537ENSDART00000154696CIL_0005RM_0003ENSG00000108671ENST00000261712ENST00000457654ENST00000469475ENST00000481992ENST00000493026ENST00000578213ENST00000578397ENST00000579451ENST00000580904ENST00000584340ENST00000585265ENSG00000176749ENST00000313401ENST00000584716ENST00000584792ENSG00000202100ENST00000365230CIL_0005RM_0004ENSMUSG00000017428ENSMUST00000017572ENSMUST00000125591ENSMUST00000129500ENSMUST00000147898ENSMUST00000148895ENSMUST00000172615ENSMUST00000172641ENSMUST00000172773ENSMUST00000172847ENSMUST00000173060ENSMUST00000173186ENSMUST00000173565ENSMUST00000173797ENSMUST00000173938ENSMUST00000174743ENSMUSG00000048895ENSMUST00000053413ENSMUST00000147694
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005RM_0001ENSDARG00000005134ENSDART00000016283ENSDARG00000045087ENSDART00000066294ENSDART00000155026CIL_0005RM_0002ENSDARG00000037916ENSDART00000055262ENSDARG00000060150ENSDART00000084448ENSDART00000151449ENSDART00000154696CIL_0005RM_0003ENSG00000108671ENST00000261712ENST00000457654ENST00000469475ENST00000584340ENSG00000176749ENST00000313401ENST00000584716ENST00000584792ENSG00000202100ENST00000365230CIL_0005RM_0004ENSMUSG00000017428ENSMUST00000017572ENSMUST00000148895ENSMUST00000172615ENSMUST00000173938ENSMUST00000174743ENSMUSG00000048895ENSMUST00000053413ENSMUST00000147694
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005134 ENSDART00000016283 N/A N/A N/A 12.378±1.41 N/A N/A 12.032±5.60 7.158±1.45 2.322±0.00 N/A 25.035±0.00 N/A N/A N/A
ENSDARG00000045087 ENSDART00000066294 N/A N/A N/A N/A N/A N/A 0.043±0.01 0.056±0.00 0.181±0.00 N/A 1.237±0.00 N/A N/A N/A
ENSDART00000155026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.989±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000037916 ENSDART00000055262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.819±0.00 N/A N/A N/A
ENSDARG00000060150 ENSDART00000084448 N/A N/A N/A 4.015±0.00 N/A N/A 3.158±1.53 8.489±0.76 N/A N/A 0.889±0.00 N/A N/A N/A
ENSDART00000151449 N/A N/A N/A 1.071±0.00 N/A N/A N/A 2.186±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000151537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000154696 N/A N/A N/A 5.615±4.44 N/A N/A 3.481±1.14 9.239±0.00 3.580±0.00 N/A 3.801±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108671 ENST00000261712 13.584±0.00 N/A 2.811±0.00 7.799±3.37 2.958±0.66 5.296±1.35 3.369±2.42 4.861±0.70 6.193±0.00 5.162±3.75 7.342±2.91 11.998±4.67 11.314±4.58 12.574±1.47
ENST00000457654 18.469±0.00 13.441±0.00 N/A 4.186±2.02 6.789±4.67 6.111±1.97 7.604±5.63 6.942±4.88 10.500±0.00 8.164±4.04 27.399±24.72 8.346±3.24 11.241±2.62 10.772±3.00
ENST00000469475 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.202±0.00 8.611±0.00 65.859±0.00 44.308±0.00 36.409±15.13
ENST00000481992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 61.945±0.00 N/A 48.888±0.00
ENST00000585265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176749 ENST00000313401 0.207±0.00 1.912±0.00 N/A 23.275±13.28 0.207±0.16 0.110±0.00 0.031±0.00 0.496±0.00 0.044±0.00 N/A 0.013±0.00 0.768±0.45 0.402±0.09 2.633±0.03
ENST00000584716 N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A 0.185±0.00 N/A N/A N/A N/A
ENST00000584792 N/A N/A 0.401±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.021±0.07 0.599±0.00 10.551±0.00
ENSG00000202100 ENST00000365230 N/A N/A N/A N/A N/A N/A N/A 0.338±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017428 ENSMUST00000017572 18.450±2.76 8.554±1.65 20.554±0.12 16.271±9.11 17.252±2.11 11.790±2.67 18.466±1.01 19.397±0.59 24.606±4.40 17.309±1.02 21.415±1.21 21.726±6.41 14.824±8.12 7.254±3.53
ENSMUST00000125591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148895 N/A N/A N/A 27.531±0.00 N/A N/A N/A N/A N/A N/A N/A 36.482±0.00 46.061±16.10 28.441±0.00
ENSMUST00000172615 N/A N/A N/A N/A 31.998±0.00 N/A N/A N/A N/A N/A N/A 28.011±0.00 N/A N/A
ENSMUST00000172641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173938 11.995±2.27 8.374±1.19 13.465±1.22 7.890±2.21 8.860±0.97 9.706±2.62 7.599±0.72 8.911±2.13 19.527±9.78 8.547±0.50 10.665±1.25 10.265±2.64 20.208±7.23 18.360±5.90
ENSMUST00000174743 12.948±0.00 N/A N/A N/A 34.847±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048895 ENSMUST00000053413 0.516±0.11 1.238±0.31 0.310±0.24 107.891±49.86 0.807±0.20 0.490±0.12 0.297±0.00 0.151±0.09 0.336±0.25 0.421±0.14 0.097±0.03 2.092±0.81 1.146±0.56 0.476±0.11
ENSMUST00000147694 N/A 1.347±0.40 0.300±0.00 450.284±0.00 1.181±0.00 0.219±0.00 N/A 0.132±0.00 N/A N/A 0.360±0.00 3.335±2.81 10.835±2.41 0.953±0.16

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