C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6963
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147879 Gm6963-001 ENSMUSG00000085799 10090 - 10:39424618-39424996 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000147879
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000147879 0.391±0.30 0.538±0.30 0.111±0.07 0.831±0.00 1.253±0.87 0.272±0.00 0.348±0.22 0.136±0.00 0.136±0.11 0.428±0.16 0.739±0.30 0.145±0.03 0.380±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0002 VISTA 10:39357714-39964005

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 342
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 342
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 326
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 364
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 364
ENST00000505780 CTD-2158P22.4-001 processed_pseudogene Homo_sapiens 0 226
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 1e-23 115
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 326
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 320
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 342
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 326

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