C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1c
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541364 TUBA1C-002 ENSG00000167553 9606 + 12:49227926-49273334 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyENST00000541364
Transcript ID Bladder Kidney
ENST00000541364 0.584±0.00 1.831±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000B CIL_00000B_0001 CGP 12:49127782-49189324
CIL_00009R CIL_00009R_0001 CGP 12:49188736-49298686

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 2023
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 1962
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 1921
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 1906
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 1881
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 1424
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1387
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1380
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 1325
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 1323
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 1308
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 1258
ENSDART00000053304 protein_coding Danio_rerio 0 1254
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 0 1216
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 1171
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 1151
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 983
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 0 965
ENSMUST00000122283 Gm15599-001 unprocessed_pseudogene Mus_musculus 0 780
ENSMUST00000134214 Tuba1a-002 processed_transcript Mus_musculus 0 739
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 599
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 575
ENSMUST00000186971 Tuba4a-008 protein_coding Mus_musculus 0 514
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 464
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 455
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 355
ENSMUST00000147879 Gm6963-001 processed_pseudogene Mus_musculus 0 326
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 279

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