C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301071 TUBA1A-001 ENSG00000167552 9606 - 12:49184796-49189324 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301071 14.588±0.00 46.433±0.00 0.946±0.00 173.537±98.80 43.975±0.00 29.211±21.22 11.398±7.67 39.736±0.00 14.605±10.81 18.509±12.52 3.282±0.00 85.308±58.76 88.138±33.09 24.236±9.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000B CIL_00000B_0001 CGP 12:49127782-49189324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003924 IEA GTPase activity
GO:0005198 TAS structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005874 TAS microtubule
GO:0005881 IEA cytoplasmic microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA:TAS microtubule-based process
GO:0019904 IEA protein domain specific binding
GO:0030705 TAS cytoskeleton-dependent intracellular transport
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0051301 TAS cell division
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 2294
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 1986
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 1947
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 1943
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 1910
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 1459
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1432
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1421
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1376
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 1341
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 1334
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 1327
ENSDART00000053304 protein_coding Danio_rerio 0 1269
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 1262
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 0 1249
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 1212
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 983
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 0 941
ENSMUST00000122283 Gm15599-001 unprocessed_pseudogene Mus_musculus 0 821
ENSMUST00000134214 Tuba1a-002 processed_transcript Mus_musculus 0 756
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 610
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 556
ENSMUST00000186971 Tuba4a-008 protein_coding Mus_musculus 0 520
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 464
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 455
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 366
ENSMUST00000147879 Gm6963-001 processed_pseudogene Mus_musculus 0 342
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 274
ENSMUST00000117636 Gm14892-001 processed_pseudogene Mus_musculus 0 272

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