C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336023 TUBA1B-001 ENSG00000123416 9606 - 12:49127782-49131395 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336023
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336023 72.921±0.00 183.934±0.00 8.187±0.00 266.370±99.30 70.289±16.41 61.136±36.51 33.099±17.40 67.382±46.70 33.625±8.28 96.598±51.82 23.508±11.45 127.923±50.55 306.549±80.27 112.181±16.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000A CIL_00000A_0001 CGP 12:49096551-49131397
CIL_00000B CIL_00000B_0001 CGP 12:49127782-49189324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0003725 IDA double-stranded RNA binding
GO:0003924 IEA GTPase activity
GO:0005198 TAS structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005874 TAS microtubule
GO:0005881 IEA cytoplasmic microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 TAS microtubule-based process
GO:0030705 TAS cytoskeleton-dependent intracellular transport
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0051301 TAS cell division
GO:0070062 IDA extracellular vesicular exosome
GO:0071353 IEA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 2169
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 2037
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 2025
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 2021
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 1999
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 1548
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1480
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1469
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1421
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 1382
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 1376
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 1373
ENSDART00000053304 protein_coding Danio_rerio 0 1319
ENSDART00000039443 tuba8l4-001 protein_coding Danio_rerio 0 1312
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 0 1232
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 1206
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 1042
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 0 1022
ENSMUST00000119255 Gm11870-001 processed_pseudogene Mus_musculus 0 915
ENSMUST00000122283 Gm15599-001 unprocessed_pseudogene Mus_musculus 0 837
ENSMUST00000134214 Tuba1a-002 processed_transcript Mus_musculus 0 756
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 654
ENSDART00000151271 tuba8l4-003 nonsense_mediated_decay Danio_rerio 0 595
ENSMUST00000186971 Tuba4a-008 protein_coding Mus_musculus 0 531
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 475
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 466
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 438
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 368
ENSMUST00000147879 Gm6963-001 processed_pseudogene Mus_musculus 0 364
ENSDART00000151822 tuba8l4-002 protein_coding Danio_rerio 0 340
ENSMUST00000117636 Gm14892-001 processed_pseudogene Mus_musculus 0 278

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