C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148178 Hnrnpm-001 ENSMUSG00000059208 10090 - 17:33646233-33686860 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IEA alternative mRNA splicing, via spliceosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005681 IEA spliceosomal complex
GO:0016020 IEA membrane
GO:0016363 IEA nuclear matrix
GO:0019904 IEA protein domain specific binding
GO:0031012 IDA extracellular matrix
GO:0042382 IEA paraspeckles
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325495 HNRNPM-002 protein_coding Homo_sapiens 0 3687
ENST00000348943 HNRNPM-001 protein_coding Homo_sapiens 0 2682
ENST00000560685 HNRNPMP1-001 processed_pseudogene Homo_sapiens 0 226
ENST00000593293 HNRNPM-014 retained_intron Homo_sapiens 0 342
ENST00000594907 HNRNPM-017 protein_coding Homo_sapiens 0 1426
ENST00000596295 HNRNPM-012 protein_coding Homo_sapiens 0 787
ENST00000596369 HNRNPMP2-001 processed_pseudogene Homo_sapiens 0 364
ENST00000596984 HNRNPM-010 protein_coding Homo_sapiens 0 436
ENST00000597081 HNRNPM-016 processed_transcript Homo_sapiens 0 1234
ENST00000597270 HNRNPM-007 protein_coding Homo_sapiens 0 896
ENST00000597813 HNRNPM-013 retained_intron Homo_sapiens 0 510
ENST00000598367 HNRNPM-008 protein_coding Homo_sapiens 0 318
ENST00000598603 HNRNPM-011 retained_intron Homo_sapiens 0 243
ENST00000598999 HNRNPM-015 protein_coding Homo_sapiens 0 390
ENST00000600092 HNRNPM-003 protein_coding Homo_sapiens 0 797
ENST00000600806 HNRNPM-004 nonsense_mediated_decay Homo_sapiens 0 2032
ENST00000601645 HNRNPM-009 protein_coding Homo_sapiens 0 754
ENST00000602219 HNRNPM-006 processed_transcript Homo_sapiens 0 695
ENST00000620401 HNRNPM-201 protein_coding Homo_sapiens 0 3624
ENST00000621170 CTB-147N14.7-001 processed_pseudogene Homo_sapiens 0 363

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