C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein M
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059208 Hnrnpm 10090 - 17:33646233-33686860 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087582 Hnrnpm-002 33646239-33685388 protein_coding
  ENSMUST00000114385 Hnrnpm-003 33646235-33685392 protein_coding
  ENSMUST00000127598 Hnrnpm-005 33676940-33685401 retained_intron
  ENSMUST00000130946 Hnrnpm-008 33646239-33660250 protein_coding
  ENSMUST00000139302 Hnrnpm-004 33646236-33685388 protein_coding
  ENSMUST00000148178 Hnrnpm-001 33646233-33686860 protein_coding
  ENSMUST00000148258 Hnrnpm-009 33650260-33666570 protein_coding
  ENSMUST00000153608 Hnrnpm-006 33668638-33685385 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087582ENSMUST00000114385ENSMUST00000130946ENSMUST00000148258
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087582 37.554±9.90 84.944±4.35 35.631±0.39 76.851±8.12 63.292±25.02 67.765±3.98 22.624±4.31 29.547±9.64 69.113±57.04 46.631±18.07 27.617±1.74 109.627±42.36 90.293±61.04 67.510±53.96
ENSMUST00000114385 N/A N/A 13.197±0.00 25.366±0.29 N/A N/A 8.428±0.00 N/A N/A N/A 11.605±0.72 32.503±8.83 22.433±12.49 N/A
ENSMUST00000130946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.346±0.00 N/A
ENSMUST00000148258 N/A N/A N/A 74.193±0.00 N/A N/A N/A N/A N/A N/A N/A 104.291±45.62 132.051±0.00 189.117±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IEA alternative mRNA splicing, via spliceosome
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005681 IEA spliceosomal complex
GO:0016020 IEA membrane
GO:0016363 IEA nuclear matrix
GO:0019904 IEA protein domain specific binding
GO:0031012 IDA extracellular matrix
GO:0042382 IEA paraspeckles
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061735 hnrnpm heterogeneous nuclear ribonucleoprotein M protein_coding Danio_rerio
ENSG00000099783 HNRNPM heterogeneous nuclear ribonucleoprotein M protein_coding Homo_sapiens

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