C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000600092 HNRNPM-003 ENSG00000099783 9606 + 19:8444971-8485648 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverLungENST00000600092
Transcript ID Bladder Brain Colon Heart Liver Lung
ENST00000600092 3.162±0.00 2.956±0.00 4.099±0.00 1.865±0.00 7.310±0.00 7.220±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0001 CGP 19:7926718-8445041
CIL_0000UT CIL_0000UT_0001 CGP 19:7958579-8445041
CIL_0005GY CIL_0005GY_0002 CGP 19:8413270-8489114

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087582 Hnrnpm-002 protein_coding Mus_musculus 0 1339
ENSMUST00000139302 Hnrnpm-004 protein_coding Mus_musculus 0 1339
ENSMUST00000148178 Hnrnpm-001 protein_coding Mus_musculus 0 797
ENSMUST00000148258 Hnrnpm-009 protein_coding Mus_musculus 0 785
ENSMUST00000114385 Hnrnpm-003 protein_coding Mus_musculus 0 771
ENSMUST00000127598 Hnrnpm-005 retained_intron Mus_musculus 0 466
ENSMUST00000153608 Hnrnpm-006 retained_intron Mus_musculus 0 436
ENSMUST00000130946 Hnrnpm-008 protein_coding Mus_musculus 4e-22 110

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