C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleolar protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149580 Nol12-005 ENSMUSG00000033099 10090 + 15:78934951-78940932 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000149580
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000149580 5.321±0.89 12.621±7.04 1.849±0.00 11.282±6.47 5.280±1.08 15.606±4.58 16.813±4.00 12.856±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_00040C CIL_00040C_0002 CGP 15:78926725-78943634
CIL_00040B CIL_00040B_0002 CGP 15:78934933-79005867

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 IDA nucleolus
GO:0008150 ND biological_process
GO:0019843 ISA rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359114 NOL12-001 protein_coding Homo_sapiens 0 479
ENST00000438329 NOL12-002 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000455236 RP1-37E16.12-001 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000468597 NOL12-006 retained_intron Homo_sapiens 0 479
ENST00000474032 NOL12-004 retained_intron Homo_sapiens 0 230
ENST00000484650 NOL12-005 retained_intron Homo_sapiens 0 387
ENST00000493862 NOL12-003 processed_transcript Homo_sapiens 0 387
ENST00000611699 NOL12-201 protein_coding Homo_sapiens 0 479

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