C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150424 Top3b-008 ENSMUSG00000022779 10090 + 16:16884212-16892990 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000150424
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000150424 20.458±2.84 9.325±2.63 16.334±0.74 16.179±5.67 18.039±2.04 17.604±2.23 9.021±2.23 24.849±2.37 13.239±4.03 11.846±1.69 2.175±0.46 24.558±4.76 13.269±3.08 18.196±1.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PT CIL_0008PT_0002 VISTA 16:16870677-17470725

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357179 TOP3B-001 protein_coding Homo_sapiens 0 2032
ENST00000398793 TOP3B-003 protein_coding Homo_sapiens 0 2032
ENST00000420768 TOP3BP1-001 processed_pseudogene Homo_sapiens 0 499
ENST00000436282 TOP3B-005 nonsense_mediated_decay Homo_sapiens 0 1053
ENST00000444502 TOP3B-002 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000457179 TOP3B-004 nonsense_mediated_decay Homo_sapiens 0 1454
ENST00000457270 TOP3B-006 protein_coding Homo_sapiens 0 1531

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