C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 1, gamma 2 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397120 AP1G2-003 ENSG00000213983 9606 - 14:23559568-23567803 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungOvaryPlacentaENST00000397120
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Ovary Placenta
ENST00000397120 3.096±0.00 14.834±0.00 1.314±0.00 2.188±0.00 10.477±0.00 8.268±0.00 7.905±4.39 9.197±2.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0001 VISTA 14:23078458-23681621
CIL_0009BW CIL_0009BW_0001 VISTA 14:23137378-23739005
CIL_0008Q4 CIL_0008Q4_0001 VISTA 14:23138150-23738498
CIL_0008QH CIL_0008QH_0001 VISTA 14:23142404-23743714
CIL_0004Z4 CIL_0004Z4_0002 CGP 14:23520855-23560271
CIL_0003BV CIL_0003BV_0001 CGP 14:23559565-23578800

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005794 TAS:IEA Golgi apparatus
GO:0005798 IDA Golgi-associated vesicle
GO:0006886 IEA intracellular protein transport
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0016192 IEA:NAS vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030121 TAS AP-1 adaptor complex
GO:0030131 IEA clathrin adaptor complex
GO:0030133 IDA transport vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036041 Ap1g2-001 protein_coding Mus_musculus 0 2586
ENSMUST00000170285 Ap1g2-201 protein_coding Mus_musculus 0 2562
ENSMUST00000133004 Ap1g2-005 processed_transcript Mus_musculus 0 1792
ENSMUST00000127870 Ap1g2-002 nonsense_mediated_decay Mus_musculus 0 1694
ENSMUST00000131323 Ap1g2-004 nonsense_mediated_decay Mus_musculus 0 1694
ENSMUST00000151314 Ap1g2-003 nonsense_mediated_decay Mus_musculus 0 1131
ENSMUST00000137548 Ap1g2-008 retained_intron Mus_musculus 0 725
ENSMUST00000153702 Ap1g2-011 retained_intron Mus_musculus 0 359
ENSMUST00000137481 Ap1g2-006 retained_intron Mus_musculus 0 294
ENSMUST00000144197 Ap1g2-007 processed_transcript Mus_musculus 0 281
ENSMUST00000003038 Ap2a2-201 protein_coding Mus_musculus 0.000001 60

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