C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Luc7 homolog (S. cerevisiae)-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152107 Luc7l-009 ENSMUSG00000024188 10090 + 17:26267275-26281968 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0002 VISTA 17:26208852-26810691
CIL_0002RY CIL_0002RY_0002 CGP 17:26211822-26285504

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005685 IEA U1 snRNP
GO:0006376 IEA mRNA splice site selection
GO:0045843 IDA negative regulation of striated muscle tissue development
GO:0050733 IPI RS domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293872 LUC7L-003 protein_coding Homo_sapiens 0 628
ENST00000337351 LUC7L-001 protein_coding Homo_sapiens 0 331
ENST00000397780 LUC7L-007 protein_coding Homo_sapiens 0 331
ENST00000397783 LUC7L-002 protein_coding Homo_sapiens 0 331
ENST00000418978 LUC7L-009 nonsense_mediated_decay Homo_sapiens 5e-26 122
ENST00000419516 LUC7L-004 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000426094 LUC7L-006 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000429378 LUC7L-016 protein_coding Homo_sapiens 0 749
ENST00000430864 LUC7L-015 protein_coding Homo_sapiens 3e-26 122
ENST00000442701 LUC7L-018 protein_coding Homo_sapiens 0 300
ENST00000443357 LUC7L-012 protein_coding Homo_sapiens 4e-26 122
ENST00000464711 LUC7L-008 retained_intron Homo_sapiens 0 544
ENST00000468732 LUC7L-017 retained_intron Homo_sapiens 0 532
ENST00000490762 LUC7L-005 retained_intron Homo_sapiens 0 532
ENST00000495349 LUC7L-014 retained_intron Homo_sapiens 0 294

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