C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152182 Capn7-002 ENSMUSG00000021893 10090 + 14:31336707-31371984 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENSMUST00000152182
Transcript ID Ovary Placenta
ENSMUST00000152182 2.921±0.15 1.167±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522
CIL_0002EF CIL_0002EF_0003 CGP 14:31336638-31436078

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005737 IBA cytoplasm
GO:0006508 IBA proteolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253693 CAPN7-001 protein_coding Homo_sapiens 0 1773
ENST00000415565 CAPN7-006 protein_coding Homo_sapiens 0 518
ENST00000443567 CAPN7-007 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000457023 CAPN7-005 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000463417 CAPN7-003 retained_intron Homo_sapiens 0 403
ENST00000472400 CAPN7-008 retained_intron Homo_sapiens 0 315

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