C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000463417 CAPN7-003 ENSG00000131375 9606 + 3:15245887-15252302 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonMuscleOvaryPlacentaTestisENST00000463417
Transcript ID Adipose Adrenal Brain Breast Colon Muscle Ovary Placenta Testis
ENST00000463417 2.758±0.00 2.011±0.00 0.939±0.05 1.886±0.00 1.610±0.00 1.426±0.00 5.151±0.00 4.018±2.87 6.276±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EF CIL_0002EF_0002 CGP 3:15206152-15341368

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143472 Capn7-003 nonsense_mediated_decay Mus_musculus 0 660
ENSMUST00000022451 Capn7-001 protein_coding Mus_musculus 0 660
ENSMUST00000152182 Capn7-002 nonsense_mediated_decay Mus_musculus 0 403

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