C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152324 Slc38a11-001 ENSMUSG00000061171 10090 - 2:65322668-65364034 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000152324
Transcript ID Adrenal Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000152324 1.760±0.88 0.251±0.08 0.277±0.00 0.330±0.00 0.207±0.14 0.026±0.00 0.743±0.35 0.028±0.00 0.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CM CIL_0006CM_0002 CGP 2:65088339-65364034
CIL_0006CP CIL_0006CP_0002 CGP 2:65316430-65567627

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303735 SLC38A11-001 protein_coding Homo_sapiens 0 628
ENST00000409058 SLC38A11-002 protein_coding Homo_sapiens 0 861
ENST00000409149 SLC38A11-003 protein_coding Homo_sapiens 0 955
ENST00000409662 SLC38A11-009 protein_coding Homo_sapiens 0 955
ENST00000424914 SLC38A11-010 protein_coding Homo_sapiens 0 267
ENST00000470576 SLC38A11-008 retained_intron Homo_sapiens 0 268
ENST00000483641 SLC38A11-007 retained_intron Homo_sapiens 0 268
ENST00000492134 SLC38A11-004 retained_intron Homo_sapiens 0 337

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