C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: excision repaiross-complementing rodent repair deficiency, complementation group 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152634 Ercc8-005 ENSMUSG00000021694 10090 + 13:108158754-108194985 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000152634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000152634 1.342±0.53 0.862±0.40 1.023±0.27 3.188±0.26 1.220±0.32 0.806±0.08 0.686±0.02 1.056±0.27 1.028±0.39 1.205±0.28 0.586±0.00 1.512±0.53 0.981±0.12 4.744±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LG CIL_0004LG_0002 CGP 13:108052590-108195364
CIL_0001YO CIL_0001YO_0002 CGP 13:108158731-108287105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0009411 IMP response to UV
GO:0010165 IMP response to X-ray

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265038 ERCC8-001 protein_coding Homo_sapiens 0 529
ENST00000381118 ERCC8-003 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000439176 ERCC8-005 protein_coding Homo_sapiens 0 412
ENST00000462279 ERCC8-004 processed_transcript Homo_sapiens 0 302
ENST00000477893 ERCC8-006 retained_intron Homo_sapiens 3.00018e-42 176
ENST00000484330 ERCC8-007 processed_transcript Homo_sapiens 0 255
ENST00000495985 ERCC8-008 processed_transcript Homo_sapiens 0 451
ENST00000497892 ERCC8-002 retained_intron Homo_sapiens 0 383

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