C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154294 Ccdc42-001 ENSMUSG00000045915 10090 + 11:68587021-68597966 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverOvaryPlacentaTestisENSMUST00000154294
Transcript ID Adipose Brain Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000154294 0.050±0.00 0.369±0.41 0.066±0.00 0.110±0.00 0.022±0.00 0.166±0.11 1.213±0.97 49.921±22.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088C CIL_00088C_0002 VISTA 11:68323475-68924174
CIL_0009AZ CIL_0009AZ_0002 VISTA 11:68337699-68940744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293845 CCDC42-001 protein_coding Homo_sapiens 0 1018
ENST00000539522 CCDC42-002 protein_coding Homo_sapiens 0 486

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