C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539522 CCDC42-002 ENSG00000161973 9606 - 17:8729950-8744787 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverLungOvaryPlacentaTestisENST00000539522
Transcript ID Breast Kidney Liver Lung Ovary Placenta Testis
ENST00000539522 0.258±0.00 0.044±0.00 0.019±0.00 0.066±0.00 0.050±0.00 0.129±0.08 82.522±43.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AZ CIL_0009AZ_0001 VISTA 17:8380027-8982000
CIL_00088C CIL_00088C_0001 VISTA 17:8397056-8997791

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063006 Ccdc42-002 protein_coding Mus_musculus 0 760
ENSMUST00000154294 Ccdc42-001 protein_coding Mus_musculus 0 486
ENSMUST00000102612 Ccdc42-003 protein_coding Mus_musculus 0 279

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