C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154593 Setd6-006 ENSMUSG00000031671 10090 + 8:95717009-95718871 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000154593
Transcript ID Bladder Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000154593 2.909±0.42 2.906±0.49 1.219±0.00 3.938±1.90 1.839±0.35 9.435±4.33 4.226±0.88 2.121±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004IY CIL_0004IY_0002 CGP 8:95676980-95719010
CIL_0004IZ CIL_0004IZ_0002 CGP 8:95715915-95807462

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219315 SETD6-003 protein_coding Homo_sapiens 0 636
ENST00000310682 SETD6-001 protein_coding Homo_sapiens 0 636
ENST00000394266 SETD6-006 protein_coding Homo_sapiens 0 636
ENST00000422445 SETD6-004 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000427443 SETD6-002 nonsense_mediated_decay Homo_sapiens 0 636
ENST00000447443 SETD6-009 protein_coding Homo_sapiens 0 281
ENST00000463954 SETD6-012 retained_intron Homo_sapiens 0 636
ENST00000491587 SETD6-013 retained_intron Homo_sapiens 0 296

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