C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155195 Synpo-004 ENSMUSG00000043079 10090 - 18:60600206-60624236 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartMuscleENSMUST00000155195
Transcript ID Brain Breast Heart Muscle
ENSMUST00000155195 19.518±0.00 4.343±1.79 12.937±1.57 29.625±7.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005737 IEA cytoplasm
GO:0005923 IEA tight junction
GO:0015629 IDA actin cytoskeleton
GO:0030425 ISO dendrite
GO:0030865 NAS cortical cytoskeleton organization
GO:0032233 IEA positive regulation of actin filament bundle assembly
GO:0043197 NAS dendritic spine
GO:0045211 IEA postsynaptic membrane
GO:0051492 IDA regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307662 SYNPO-001 protein_coding Homo_sapiens 0 1807
ENST00000394243 SYNPO-002 protein_coding Homo_sapiens 0 1766
ENST00000518872 SYNPO-005 processed_transcript Homo_sapiens 0 213
ENST00000519664 SYNPO-004 protein_coding Homo_sapiens 0 1807
ENST00000522122 SYNPO-003 protein_coding Homo_sapiens 0 1766

Loading