C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: transmembrane and coiled-coil domains 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155470 Tmco5-002 ENSMUSG00000027355 10090 + 2:116878694-116892137 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENSMUST00000155470
Transcript ID Brain Testis
ENSMUST00000155470 1.578±0.00 682.579±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QR CIL_0006QR_0002 CGP 2:115863064-116892494
CIL_000806 CIL_000806_0002 VISTA 2:116507729-117109252
CIL_0006QQ CIL_0006QQ_0002 CGP 2:116878691-117182279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319669 TMCO5A-001 protein_coding Homo_sapiens 0 322
ENST00000558158 TMCO5A-004 protein_coding Homo_sapiens 0 322
ENST00000558625 TMCO5A-006 protein_coding Homo_sapiens 0 315
ENST00000559502 TMCO5A-005 protein_coding Homo_sapiens 0 322
ENST00000559813 TMCO5A-003 retained_intron Homo_sapiens 0 322
ENST00000560653 TMCO5A-008 nonsense_mediated_decay Homo_sapiens 0 322

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