C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylglycerophosphate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155507 Pgs1-002 ENSMUSG00000017715 10090 + 11:118012343-118024011 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaENSMUST00000155507
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000155507 3.196±0.14 1.854±0.09 3.089±0.00 3.572±0.44 1.164±0.07 1.840±0.20 6.687±0.00 0.953±0.10 3.773±0.76 2.656±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_0003UD CIL_0003UD_0003 CGP 11:117966079-118024011
CIL_00062Y CIL_00062Y_0002 CGP 11:117986292-118129219

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262764 PGS1-001 protein_coding Homo_sapiens 0 510
ENST00000588169 PGS1-005 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000588281 PGS1-007 processed_transcript Homo_sapiens 0 390
ENST00000589425 PGS1-002 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000591996 PGS1-008 retained_intron Homo_sapiens 0 390

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